-in
	-file
		-s dock_highres.pdb 
		# the input file should have two single, complete chains A and B
		# for Ab molecules (with L+H chains) use -docking::partners flag below
	-path
		-database /programs/l/rosetta/3.1-x86_64/rosetta_database/
		# customize this to point to your installation directory
-docking
	# very small perturbations occur in the absence of any docking flags
	#-docking_local_refine
	#-dock_pert 3 8
	# do a small perturbation with partner2: -dock_pert DEGREES ANGSTROMS
	#-spin
	# rotate partner2 about the intermolecular axis
	#-dock_min
	# Minimize the final fullatom structures. default='false'
	#-partners 
	# defines the docking partners by ChainID; see manual
-out
	-nstruct 10
	# this should be set to a large number for effective sampling
	-mute core.util.prof
	# reduces copious output, without overdoing as with -mute all
	-file
		-o dock_output2
		# scorefile will be named dock_output2.sc (or .fasc for fullatom)
		-fullatom
