-parser:protocol peptiderive.xml
-jd2:delete_old_poses
-nstruct 1
#-out:chtimestamp
-out:no_nstruct_label
#-out:mute core.conformation.Conformation
#-out:mute protocols.moves.RigidBodyMover
-run:other_pose_to_scorefile
-ex1
-ex2
-randomize_missing_coords
-ignore_unrecognized_res
-override_rsd_type_limit
