#Input
-ignore_unrecognized_res
-ignore_zero_occupancy false
-load_PDB_components false

#Output
-pdb_comments
-scorefile_format json
-skip_connect_info

#Rotamers/packing (Off for speed)
#-ex1
#-ex2
-use_input_sc

#Minimization (Off for speed)
#-nblist_autoupdate

#Common
-jd2:delete_old_poses
-other_pose_to_scorefile

-include_sugars
